I am PhD candidate in the Department of Computer Science at Brown University and advised by Sorin Istrail. I am interested in the theoretical design and efficient implementation of algorithms specializing in computational biology. If you are looking for our haplotype assembly algorithm HapCompass or other Istrail Lab related research projects, please see the Istrail Lab webpage.
HapCompass haplotype assembler
HapCompass is a state-of-the-art haplotype assembler presented at ISMB 2013 and published in Bioinformatics and the
Journal of Computational Biology. It is extremely accurate and efficient and the only haplotype assembly algorithm capable of
polyploid haplotype assembly.
more on HapCompass
see more software
Please send mail to
Box 1910, Computer Science Department
Providence, RI 02912
rap at cs.brown.edu