We are in the process of developing the group GitHub. For now, many of these links refer to Istrail Lab or Engelhardt Lab resources.

• Bayesian nonparametric discovery of Isoforms and Individual Specific Quantification with BIISQ. Version 1.0.0.[code]
• HapCompass: fast cycle basis algorithms for accurate diploid and [code]
• Tractatus: an exact and subquadratic algorithm for inferring identity-by-descent multi-shared haplotype tracts. Version 0.0.1.[code]
• A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systems. Version 1.0.0. [code]
• DELISHUS: an e cient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Version 0.1.0. [code]
• CYRENE cis-Regulatory Genome Browser. Version 1.0.0. [code]